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I 20. What are the intermolecular forces responsible for the folding of amino acid chains into...
21. How can two different proteins have the same molecular formula, yet have different folds and structures.
Draw two amino acid side chains that can interact with each other via the following intermolecular interactions: a. ion pairing (salt bridge) b. hydrogen bond c. van der Waals interaction (London dispersion forces)
1 Proteins are long chains of amino acids. There are 4 parts to each amino acid. Which part is responsible for structural variation in proteins? The side chain The carboxylic acid group The amino group The alpha carbon 2. Why is it important to examine the shapes of complex biological molecules and drugs? All of the choices given So scientists can explain biochemical reactions So scientists can design medications So scientists can determine how molecules fit together 3. Determine the...
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Discuss how the properties of acidity, basicity, and polarity arise for some amino acids. 8. How does water interact with hydrophobic and hydrophllic molecules? How does water interact with amino acid side chains, and how does this facilitate the folding of proteins? 9. Describe how amino acids are linked together to form protein chains. 10. What does the Ramachandran plot describe? How is it useful in describing protein structure? 11. What physical forces act on the amino...
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3) Protein structure and amino acid side chains a) Give examples of the types if attractive forces found between the side chains of the following amino acid residue pairs at pH 7.4 00 Leu and Phe (ii) Two Cys (ii) Asp and Thr (iv) Asp and Arg b) Of the 4 levels of protein structure, which ones are stabilized by interactions between amino acid side chains? c) Identify the two regular types of secondary structures and describe the...
What type of intermolecular bonding is responsible for waters strong intermolecular forces Name two of the five parts of the kinetic molecular theory of matter When a gas is heated in a sealed rigid container what happens to the pressure of the gass? In terms of collision s between gas particles and the walls of the container, what are the 2 reasons why heating the gas does this to the pressure. A balloon placed in cold liquid nitrogen will begin...
INTERMOLECULAR FORCES INTRODUCTION LEARNING OBJECTIVES To relate the effecet of intermolecular forces on relative melting points and vapour pressures of some organic substances THEORY Weak attractive forces that occur between individual molecules in substances are called intermolecular forces. These include London dispersion forces, dipole-dipole forces and hydrogen-bonding forces. Collectively, the three types of intermolecular forces are referred to as Van der Waals forces. These attractive forces are much weaker than the chemical bonds between atoms in a molecule. Note that...
20. Protein amino acid side chains can hydrogen bond in the major groove of DNA, and discriminate between each of the four possible base pairs. In which one of the following groups of amino acids can all three members potentially be used in such DNA-protein recognition? A) Ala, Asn, Glu B) Arg. Gin, Leu C) Asn, Gin, Trp D) Asn, Glu, Lys E) Glu, Lys, Pro 21. Compared with DNA polymerase, reverse transcriptase: A) does not require a primer to...
questions e-f and g.and k.
a) Use the 3 letter symbols for a 6 amino acid peptide chain containing at least one polar and at least one acidic or basic amino acid. (All at physiological pH.) Asp - Gly-Glu-Tyr- Phe- Ala OM b) Draw the primary structure with its peptide bonds, side chains, etc. in the correct order. CH3 NH - E-N -CH. - CH - C- 2-I U=0 -ch- & N-chi- CH₃ CH ₂ Coo CH н My Coo...
6.) Provide short answers for the questions about protein structure below: a.) True or False, amino acid sequence defines the native structure of protein. b.) What is the main type of bonding responsible for stabilizing the secondary structure of proteins? c.) Briefly discuss the thermodynamics of protein folding into its native 3D structure. Is this process enthalpy driven or entropy driven? d.) Give an example of 2 major secondary structural motifs found in polypeptides. Do any of these motifs appear...