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How do you get this answer? Running RNAfold on a 4kb sequence on my desktop (using...

How do you get this answer?

Running RNAfold on a 4kb sequence on my desktop (using the default parameters) takes 7 seconds. For roughly how many seconds would you expect RNAfold to run on an 8kb sequence?

ANSWER: 14 seconds

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Answer #1

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In general, RNAFold binary expects only single sequences, 1 per the line.
In your question, it takes 7 seconds for running on a 4kb sequence.
Similarly time doubles as we change from 4kb to 8kb.
Therefor 7*2 = 14 .
So to run on an 8 kb sequence it would be 14 seconds.

/// Thank you ///

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