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Predict what secondary structure of the peptide, GTAKEGITEAGYG, will be. Justify your answer with what you...

Predict what secondary structure of the peptide, GTAKEGITEAGYG, will be. Justify your answer with what you know about secondary structure elements.

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Answer #1

The secondary structure of the peptide GTAKEGITEAGYG

Is CHHHHEEEEEEEC

Here, C is for amino acid in turns and coil

E is for beta sheet

H is for helix

This result is in accordance with the CHOU-FASMAN method, where each amino acid have specific property and structure to come in either alpha helix, beta sheet and turns and coils. For example, Glycine, have more probability to come in turns and coil because of small structures.  

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