Ans) The formula for monomeric protein binding with single
ligand is
=
Where
= Binding affinity of ligand for the protein (Here given as 20% or
0.2)
L = Ligand concentration (Here given as 300nM)
Kd = Equilibrium dissociation constant (To be found out)
Substituting the values in the formula we get :
0.2 =
0.2 (Kd + 300) = 300
0.2Kd + 60 = 300
0.2Kd = 240
Kd = 240/0.2 = 1200nM
The Kd of maltose binding protein for its ligand is 1200 nM.
In E. coli, maltose-binding protein binds maltose in the periplasm to deliver the sugar to a...
A binding protein binds to a ligand L with a K_d of 400 nM. What is the concentration of ligand when is a) 0.25, b) 0.6, c) 0.95?
A binding protein binds to a ligand with Kd=30nm. What is the
concentration of ligand when the [L] when the fraction
bound,,
is a) 0.25, b) 0.6 and c) 0.95.
Short answer questions: 21. Protein A has a binding site for ligand L with a Ka of 10-6 M. Protein B has a binding site for ligand L with a Ka of 10'M. (a). Which protein has a higher affinity for ligand L? Explain your reasoning. (b). At what concentration of ligand L is proteins A half-saturated. At what concentration of L is protein B half-saturated. [L] y = [L] + Ka 22. A protein binds to a ligand L...
If 20% of binding sites of a protein are occupied by its ligand when the concentration of the ligand is 1mM, what is the Kd of this protein-ligand interaction? A. 0.2mM B. 1mM C. 2.5 mM D. 4mM E. 5mM
LLI (nM) 92 The data at right describe the binding of a ligand to a protein: 0.1 0.07 s [L] is the concentration of free ligand. e is the fraction of sites on the protein that are occupied by the ligand. (Note that some textbooks use terms like v or Y, instead of 6, to denote fractional saturation) 0.4 0.23 0.36 Answer parts (a) and (b) below. 0.55 1.2 (a) Which of the following graphs could be used to estimate...
The gene machine program shows you what happens when lactose is present in E. coli, and how the lac operon is under negative control. However, the lac operon is also under positive control from a protein called CRP, eAMP Receptor Protein. The absence of the lac repressor is essential but not sufficient for effective transcription of the lac operon. RNA polymerase also depends on the presence of CRP. Like the lac repressor, which can bind to the DNA and lactose....
Question 1 (1 point) Vasoconstriction occurs when epinephrine (adrenaline) binds to the a-adrenergic receptor on vascular smooth muscle cells. One way to treat high blood pressure is to administer competitive inhibitors that bind to this receptor. The Kd for binding of epinephrine to this receptor is ~UM. Based on the measured affinity (Kd) of the following drugs for the a-adrenergic receptor, which might be good candidates for high blood pressure medication? Drug A: Kd = 0.6 M; Drug B: Kd...
biochemistry
if you could please help me answer the following questions!
EFT i 11) (6 pts) Which types of symmetry are possible for a protein with six (6) identical subunits? (Select all correct answers) a) cyclic C b) cyclic C3 c) dihedral D2 d) dihedral D e) octahedral o f) icosahedral ро, Yo₂ - pO₂+ Pso 12) (6 pts) What is the fractional saturation of oxygen binding to myoglobin when the partial pressure of oxygen is 1.5 torr and dissociation...
lab question 1. What is the basis of the different purification methods? 2. What are some of the factors the might have interfered with your results? 3. How might you improve the process to increase the yield and purity? lab process E. coli BL21 (DE3) cells were transformed with the pET Topo-1521 vector containing a reading frame encoding the green fluorescent protein (GFP). Cells were cultured in M9ZB media at 37°C until the absorbance at 600 nm reached 0.7, at...
2.) Activator and helper. Figure 19.29B gives the fold change
for a genetic network with an activator and helper. However, it
contains several mistakes that we will fix here.
a.) Derive the formula for the fold change under the assumptions
of a weak promoter and �!"# $% ≫ �. Show that the fold change is
given by the formula below rather than that in the book. Hint: The
schematic in Figure 19.29B should be helpful in determining the
states and...