4) How do the binding interactions made by distant portions of a peptide substrate to chymotrypsin cause an increase in kcat? Assume that kcat corresponds to the chemistry step on the enzyme. 1-2 sentence answer.
The binding interactions made by distant portions of a peptide substrate to chymotrypsin cause an increase in Kcat which may be due to the following reasons:
a. Remote binding can localize the substrate to the active site and position substrates relative to enzymatic functional groups.
b. They can also trigger conformational change and promote the active site environment by solvent exclusion.
4) How do the binding interactions made by distant portions of a peptide substrate to chymotrypsin...
Acetylcholine is the substrate for the enzyme
acetylcholinesterase.
1. Suggest what sort of binding interactions could be involved
in holding acetylcholine to the active site.
2. The ester bond of acetylcholine is hydrolysed by
acetylcholinesterase. Suggest a mechanism by which the enzyme
catalyses this reaction.
3. Suggest how binding interactions might make acetylcholine
more susceptible to hydrolysis.
4. Structure I is an agonist which binds to the cholinergic
receptor and mimics the action of the natural ligand acetylcholine.
Structure II,...
1.. Example questions to guide you through the mechanism study of Serine proteases Describe substrate binding, including the role and chemical nature of the "specificity pocket" in chymotrypsin, and which peptide bond in the substrate (relative to the specificity group) will be cleaved. Draw the structure of the catalytic triad at the beginning of the reaction, and explain how the states of ionization and hydrogen bonding pattern of those 3 groups change step by step during catalysis. Explain the role...
Please answer ALL questions or I'll thumbs
down!
2) Imagine an enzyme that has a histidine in the substrate binding pocket that regulates substrate binding based on its protonation state to control enzyme function. Substrates can only bind in the unprotonated state; in other words, substrate binding is blocked when the histidine is protonated and when the substrate is bound, the histidine cannot be protonated. This enzyme exhibits classical Michaelis-Menten behavior. a) Assume that the pka of the histidine in...
how do you make a lineweaver-burk plot where the trend line
extends backwards? is there a way of figuring out how far back it
should extend based of your data ? As well, how do you plot two
sets of data on one graph ? Thank you! (idk if you need to see my
data-> attached below)
Biochemistry Enzyme Kinetics Assignment Four answers for this assignment will be completed in elearn: En in elearn: Enzyme Kinetics Quiz ots but must...
Can someone answer these questions please!? Need help!!!! 1. Compare the optimum pH results obtained for amylase and pepsin with those predicted in the Pre-Laboratory Assignment. Discuss any possible discrepancies between the predicted and experimental results. 2. What was the purpose of including control samples containing only substrate and buffer (test tubes 1−4 for each enzyme) in this study? Did any of these mixtures show any reaction? 3. Protein digestion involves the hydrolysis of peptide linkages and ...
6. What does a buffer do? Why are bicarbonate and phosph Henderson Hasselbalch equation to calculate pH if pKa i ate really good biological buffers? Use the s 4.0, [A-1-10μΜ, and [HA-1000μΜ 7. In what eukaryotic cell structure (cytosol, nucleus, mitochondrion, inner mitochondrial membrane, rough ER, smooth ER, plasma membrane etc.) do the following functions take place? Transcription Translation (2 sites) Glycolysis Kreb's Cycle Electron transport chain AG, of a reaction is +11,600 The standard J/mol. What is K at...
Please fill in the blanks!
Shown below is a proposed mechanism for the cleavage of sialic acid by the viral enzyme neuraminidase. The kcat for the wild-type enzyme at pH 6.15,37 °C is 26.8s- Y409) Y409) (D149) (D149) онон ﹀R374-1st Step -ROH R' C-N R374 (E117) (E117) +H2O ↓ 2nd Step Y409) Y409) (D149) 8 ,0149 D149) OH OH H2N R374 (E117) (E117) Part A Describe the roles of the following amino acids in the catalytic mechanism: Glul17, Tyr409, and...
biochemistry
if you could please help me answer the following questions!
741) (5 pts) Transition state theory relates the rate constant to the free energy of activation, AG. How can enzymes reduce the activation energy barrier? a) decrease the free energy of the product b) high affinity binding to the transition state c) increase the free energy of the substrate d) increase entropy upon release of product e) bind to the substrate with high affinity 2) (5 pts) Which is...
biochemistry
if you could please help me answer the following questions!
* 1. (5 pts) Which of the following is a catalytic mechanism utilize by enzymes? Multiple answers may be correct. Select all that are correct. 1. Acid-base a) acid-base catalysis d. metal-ion catalysis 12. Covalent b covalent catalysis e. transition state binding c. heterogeneou 3. Metalion . Proximin onentation, E 2. 76 pts) What is the "steady-state" assumption in the derivation of the s.clectrosch? Tynsin Michaelis-Menten equation? Sie binding...
Question 4 Multi-Part Questions. Make sure to answer ALL parts (a-c)! You have isolated two versions of the same enzyme, a wild type and mutant. The marteses You have determined the following kinetic characteristics for each of the enzymes. Vmax Wild Type Km 200 umol / min 0.2mm Mutant 2 umol / min 20mm and the reaction is a two-step reaction where k.1 is much larger than k3, which enzyme has the higher affinity for substrate to you You determine...